notebooks/00_getting_started.ipynb —
an executable end-to-end mirror of intro.html. Thirteen
cells: build a spike train, group into a population, fit a Poisson
GLM, check it with the time-rescaling KS test, then decode a hidden
stimulus from a population with the PPAF. Self-contained
(simulated data only, no figshare dataset, no JAX-heavy extras).
Now part of the CI ci_smoke notebook group so a
regression in the public API surfaces on every PR.intro.html — two new entries
at the top of the "Where to next" section: a Concepts &
Background card (the 14-page learning track) and a Hands-on
tutorials card pointing at examples/tutorials/. Both
surfaces existed since v0.4.4 but were invisible from the 5-minute
tour.docs/Examples.md — a table mapping every
concepts page to its tutorial scripts, MATLAB-help-port notebooks,
and paper examples. Bridges "I just read this concept" to "what
code should I run next?"<a id="slug"></a> anchors injected before
each **Term.** line in
docs/concepts/glossary.md (slugs derived
deterministically). Every concepts learning-track page
now opens with a "Glossary jumps" box of 5–11 inline links
into the glossary, or a shorter "See also" pointer on the three
navigational pages.docs/concepts/pitfalls_and_faq.md.actions/checkout@v6, setup-python@v6,
cache@v5, upload-artifact@v7,
download-artifact@v8,
configure-pages@v6,
upload-pages-artifact@v5,
deploy-pages@v5. Removes the Node-20-deprecation
warning that surfaced on the v0.4.5 deploy-docs run.AGENT_GUIDE.md source layout now
lists examples/tutorials/,
examples/extras/, and docs/concepts/
— surfaces present since v0.4.4 but missing from the
agent-orientation paragraph.RELEASE_READINESS.md refreshed: PyPI
Trusted-Publisher setup marked operational (running on
every release since v0.4.1); Tier 0.3 follow-ups moved to
"shipped"; v0.4.6 candidate list added; standing release
checklist expanded with the per-iteration
docs/changes/*.html pattern and the post-v0.4.5
manual deploy-docs trigger step.docs/extras_summary.html "What's
planned" section: removed the stale "EM accuracy hardening"
bullet (shipped in v0.4.x); section header retitled "Beyond
v0.4.x"; added an "Already shipped" recap.parity/methods_roadmap.md "Suggested
sequencing": rewritten to acknowledge that Tiers 0.1/0.2/0.3, 1.1,
and 2.1 are now shipped — the remaining sequence is Tier
3.1 (CLDS) → 3.2 (NPNR) → 3.3 (GP-based GLM filters).
Top-of-file lede updated; broken ../CLAUDE.md link
generalised.| Check | Result |
|---|---|
make docs-strict (Sphinx -W, clean rebuild) | passes |
make readme-check + make helpfile-check | passes |
Four version-bearing files in sync (tests/test_version_sync.py) | 0.4.6 |
Notebook CI-groups invariants (tests/test_notebook_ci_groups.py) | passes (ci_smoke ⊂ parity_core) |
00_getting_started.ipynb runs end-to-end via tools/notebooks/run_notebooks.py | passes |
| Public-API surface | unchanged |
None.