Example Index

This page mirrors the MATLAB Examples help index and points to the canonical Python notebook or script equivalent for each workflow.

Paper cross-reference:

• Paper-Aligned Toolbox Map

Class and Object Workflows

• SignalObjExamples: notebooks/SignalObjExamples.ipynb

• CovariateExamples: notebooks/CovariateExamples.ipynb

• CovCollExamples: notebooks/CovCollExamples.ipynb

• nSpikeTrainExamples: notebooks/nSpikeTrainExamples.ipynb

• nstCollExamples: notebooks/nstCollExamples.ipynb

• EventsExamples: notebooks/EventsExamples.ipynb

• HistoryExamples: notebooks/HistoryExamples.ipynb

• TrialExamples: notebooks/TrialExamples.ipynb

• TrialConfigExamples: notebooks/TrialConfigExamples.ipynb

• ConfigCollExamples: notebooks/ConfigCollExamples.ipynb

• ConfidenceIntervalOverview: notebooks/ConfidenceIntervalOverview.ipynb

Fitting, Assessment, and Analysis

• AnalysisExamples: notebooks/AnalysisExamples.ipynb

• AnalysisExamples2: notebooks/AnalysisExamples2.ipynb

• FitResultExamples: notebooks/FitResultExamples.ipynb

• FitResultReference: notebooks/FitResultReference.ipynb

• FitResSummaryExamples: notebooks/FitResSummaryExamples.ipynb

Simulation and Example-Data Analyses

• PPThinning: notebooks/PPThinning.ipynb

• PPSimExample: notebooks/PPSimExample.ipynb

• PSTHEstimation: notebooks/PSTHEstimation.ipynb

• ValidationDataSet: notebooks/ValidationDataSet.ipynb

• mEPSCAnalysis: notebooks/mEPSCAnalysis.ipynb

• ExplicitStimulusWhiskerData: notebooks/ExplicitStimulusWhiskerData.ipynb

• HippocampalPlaceCellExample: notebooks/HippocampalPlaceCellExample.ipynb

Decoding and Network Workflows

• DecodingExample: notebooks/DecodingExample.ipynb

• DecodingExampleWithHist: notebooks/DecodingExampleWithHist.ipynb

• StimulusDecode2D: notebooks/StimulusDecode2D.ipynb

• HybridFilterExample: notebooks/HybridFilterExample.ipynb

• NetworkTutorial: notebooks/NetworkTutorial.ipynb

Consolidated Paper Workflow

All five paper examples are self-contained scripts mirroring their MATLAB counterparts:

Example	Script	What it demonstrates
01 — mEPSC Poisson	example01_mepsc_poisson.py	Constant vs piecewise Poisson under Mg2+ washout
02 — Whisker Stimulus	example02_whisker_stimulus_thalamus.py	Explicit-stimulus GLM with lag and history selection
03 — PSTH and SSGLM	example03_psth_and_ssglm.py	PSTH comparison and state-space GLM dynamics
04 — Place Cells	example04_place_cells_continuous_stimulus.py	Gaussian vs Zernike receptive-field models
05 — PPAF and PPHF	example05_decoding_ppaf_pphf.py	Adaptive and hybrid point-process decoding

• Generated gallery and figure index: Paper Examples

• Master notebook: notebooks/nSTATPaperExamples.ipynb

Supplementary (README) Examples

These smaller demos serve as quick install and plotting checks:

Example	Run command
Multitaper spectrum + spectrogram	python examples/readme_examples/example1_multitaper_and_spectrogram.py
Simulated CIF spike train	python examples/readme_examples/example2_simulate_cif_spiketrain_10s.py
Spike-train raster	python examples/readme_examples/example3_nstcoll_raster_from_example2.py