Index

A

add_params_to_fit() (nstat.FitResult method) add_placeholder_plot() (nstat.FigureTracker method) add_reference_plot() (nstat.FigureTracker method) add_single_spike_to_coll() (nstat.SpikeTrainCollection method) add_to_coll() (nstat.CovariateCollection method) (nstat.SpikeTrainCollection method)

aic() (nstat.FitResult method) align_time() (nstat.Signal method) aligned_binned_observation() (nstat.Trial method) Analysis (class in nstat) as_cif_model() (nstat.FitResult method)

B

bic() (nstat.FitResult method) bin_coeffs() (nstat.FitSummary method)

bin_counts() (nstat.SpikeTrain method) binarize() (nstat.SpikeTrain method) box_plot() (nstat.FitSummary method)

C

cell_array_to_structure() (nstat.FitResult static method) CIFModel (class in nstat) compute_diff_mat() (nstat.FitSummary method) compute_fit_residual() (nstat.Analysis static method) compute_inv_gaus_trans() (nstat.Analysis static method) compute_ks_stats() (nstat.Analysis static method) compute_mean_plus_ci() (nstat.Covariate method) compute_plot_params() (nstat.CIFModel method) (nstat.FitResult method) compute_spike_rate_cis() (nstat.DecodingAlgorithms static method) compute_spike_rate_diff_cis() (nstat.DecodingAlgorithms static method)

compute_stimulus_cis() (nstat.DecodingAlgorithms static method) compute_val_lambda() (nstat.FitResult method) ConfidenceInterval (class in nstat) ConfigCollection (class in nstat) contains() (nstat.ConfidenceInterval method) copy() (nstat.CovariateCollection method) (nstat.Signal method) (nstat.SpikeTrain method) (nstat.SpikeTrainCollection method) copy_signal() (nstat.Signal method) Covariate (class in nstat) CovariateCollection (class in nstat)

D

data_is_present() (in module nstat) data_to_matrix() (nstat.CovariateCollection method) (nstat.Signal method) (nstat.SpikeTrainCollection method) data_to_matrix_from_names() (nstat.CovariateCollection method) data_to_matrix_from_sel() (nstat.CovariateCollection method)

decode_state_posterior() (nstat.DecodingAlgorithms static method) decode_weighted_center() (nstat.DecodingAlgorithms static method) DecodingAlgorithms (class in nstat) derivative() (nstat.Signal method) design_matrix() (nstat.CovariateCollection method) (nstat.HistoryBasis method) duration_s (nstat.Signal property)

E

ensure_example_data() (in module nstat) eval_lambda_delta() (nstat.CIFModel method)

evaluate() (nstat.CIFModel method) Events (class in nstat)

F

fdr_bh() (nstat.Analysis static method) fetch_matlab_gold_file() (in module nstat) FigureTracker (class in nstat) filtfilt() (nstat.Covariate method) fit_glm() (nstat.Analysis static method) fit_trial() (nstat.Analysis static method)

FitResult (class in nstat) FitSummary (class in nstat) from_structure() (nstat.CIFModel static method) (nstat.Covariate static method) (nstat.FitResult class method) (nstat.FitSummary class method)

G

get_all_cov_labels() (nstat.CovariateCollection method) get_coeff_index() (nstat.FitResult method) (nstat.FitSummary method) get_coeffs() (nstat.FitResult method) (nstat.FitSummary method) get_cov() (nstat.CovariateCollection method) (nstat.Trial method) get_cov_dimension() (nstat.CovariateCollection method) get_cov_ind_from_name() (nstat.CovariateCollection method) get_cov_indices_from_names() (nstat.CovariateCollection method) get_data_dir() (in module nstat) get_design_matrix() (nstat.Trial method) get_diff_aic() (nstat.FitSummary method) get_diff_bic() (nstat.FitSummary method) get_diff_log_likelihood() (nstat.FitSummary method) get_first_spike_time() (nstat.SpikeTrainCollection method) get_last_spike_time() (nstat.SpikeTrainCollection method)

get_neuron() (nstat.Trial method) get_nst() (nstat.SpikeTrainCollection method) get_nst_from_name() (nstat.SpikeTrainCollection method) get_nst_indices_from_name() (nstat.SpikeTrainCollection method) get_nst_name_from_ind() (nstat.SpikeTrainCollection method) get_nst_names() (nstat.SpikeTrainCollection method) get_param() (nstat.FitResult method) get_plot_params() (nstat.FitResult method) get_spike_times() (nstat.SpikeTrain method) (nstat.SpikeTrainCollection method) get_spike_vector() (nstat.Trial method) get_sub_signal() (nstat.Covariate method) (nstat.Signal method) get_unique_labels() (nstat.FitResult method) (nstat.FitSummary method) get_unique_nst_names() (nstat.SpikeTrainCollection method) glm_fit() (nstat.Analysis static method)

H

HistoryBasis (class in nstat)

I

InstallReport (class in nstat) integral() (nstat.Signal method)

is_cov_present() (nstat.CovariateCollection method) is_sample_rate_consistent() (nstat.Trial method)

K

kalman_filter() (nstat.DecodingAlgorithms static method) kalman_fixed_interval_smoother() (nstat.DecodingAlgorithms static method)

kalman_predict() (nstat.DecodingAlgorithms static method) kalman_update() (nstat.DecodingAlgorithms static method)

L

latest_matlab_gold_version() (in module nstat) linear_predictor() (nstat.CIFModel method)

list_matlab_gold_files() (in module nstat) log_likelihood() (nstat.CIFModel method)

M

map_cov_labels_to_unique_labels() (nstat.FitResult method) merge() (nstat.Signal method) (nstat.SpikeTrainCollection method)

module nstat

N

n_act_covar() (nstat.CovariateCollection method) n_channels (nstat.Signal property) n_samples (nstat.Signal property)

nstat module nstat_install() (in module nstat) num_act_cov() (nstat.CovariateCollection method)

P

predict() (nstat.FitResult method)

R

resample() (nstat.Signal method)

run_analysis_for_all_neurons() (nstat.Analysis static method) run_analysis_for_neuron() (nstat.Analysis static method)

S

sample_rate_hz (nstat.Signal property) set_fit_residual() (nstat.FitResult method) set_inv_gaus_stats() (nstat.FitResult method) set_ks_stats() (nstat.FitResult method) set_max_time() (nstat.SpikeTrain method) (nstat.SpikeTrainCollection method) set_min_time() (nstat.SpikeTrain method) (nstat.SpikeTrainCollection method) set_neuron_name() (nstat.FitResult method)

shift_time() (nstat.SpikeTrain method) (nstat.SpikeTrainCollection method) Signal (class in nstat) simulate_by_thinning() (nstat.CIFModel method) simulate_cif_by_thinning_from_lambda() (nstat.CIFModel static method) SpikeTrain (class in nstat) SpikeTrainCollection (class in nstat) subset() (nstat.Events method) sum_dimensions() (nstat.CovariateCollection method)

T

to_binned_matrix() (nstat.SpikeTrainCollection method) to_spike_train() (nstat.SpikeTrainCollection method) to_structure() (nstat.CIFModel method) (nstat.Covariate method) (nstat.FitResult method) (nstat.FitSummary method)

Trial (class in nstat) TrialConfig (class in nstat)

W

width() (nstat.ConfidenceInterval method)